Normal Flora of Human Body

The normal flora of the human body refers to the microbial community that colonizes on the skin and mucus membrane. Normal flora is sometimes called indigenous microbiota, as they reside within or on the human’s skin surface.

Diverse microflora such as bacteria, fungi and some protists are associated on or within the skin surface. Among different microorganisms, gram-positive bacteria (Staphylococci and Micrococci species) prevail.

The normal microflora usually does not harm or aids the hosts. However, any disturbances in the normal microflora may give rise to opportunistic pathogens that may harm the host cells. Some indigenous microbiota generally exists as commensals, which means one partner benefits and the second one remains unaffected.

Therefore, we can say that the normal microflora show three kinds of relationship with the host, namely mutualism, parasitism and commensalism. In this context, we will discuss the definition, types and characteristics of the normal microflora along with their presence in or on the different sites of the human body.

Content: Normal Flora of Human Body

  1. Definition
  2. Types
  3. Characteristics
  4. Distribution and Occurrence
  5. Beneficial Effects
  6. Harmful Effects
  7. Significance

Definition of Normal Flora

The normal flora merely refers to the population of microorganisms like bacteria, fungi and few protists, which typically colonize at the specific anatomical sites of the human body. The surface tissues (skin and mucus membrane) of the human body are generally non-sterile.

However, the internal organs and tissues (spleen, liver, pancreas, bladder, blood vessels etc.) are generally sterile unless any infection occurs. In the human body, the normal microflora is predominantly grouped into resident and transient microflora.

Types of Normal Flora

The human microbiota are primarily classified into two groups:

Resident Flora

  • They are fixed-type of microorganisms, which are generally non-pathogenic.
  • Resident microflora confines permanently to the skin’s deeper areas.
  • They can reestablish themselves if disturbed.
  • They can not be flushed off from the anatomical site.
  • Resident flora is not associated with disease transmission.

Transient Flora

  • They are indeterminate-type of microorganisms, which can be non-pathogenic or potentially pathogenic.
  • Transient microflora confines temporarily to the skin’s superficial layers for hours, days or weeks.
  • They can not reestablish themselves.
  • They can be flushed off from the anatomical site.
  • Transient flora is closely associated with disease transmission, as they serve as opportunistic microorganisms derived from the environment.

Here, we need to remember that any disturbances in the population of resident microflora may consequence the colonization and proliferation of transient microflora, which produces diseases.

Characteristics of the Normal Flora

  1. Normal flora contains more than 200 bacterial species, among which gram-positive bacteria predominate.
  2. The factors influencing the normal microflora include age, diet, nutrition, sex, and immune conditions of a person.
  3. Microbial flora has Spatio-temporal complexity.
  4. Viruses and parasites do not constitute the normal microflora.
  5. Under normal conditions, microflora is harmless or even beneficial.
  6. Any disturbances in the normal flora may harm the host through the consequence of opportunistic microorganisms that may eventually cause disease or an infection.
  7. A human body is colonized with the normal flora once a neonate or newborn body is passed through the mother’s vaginal tract or exposed to the environment.
  8. A new born baby establishes the oral and nasopharyngeal flora within few hours.
  9. After one day, resident flora establishes in the lower intestinal tract of the neonate.

Distribution and Occurrence of the Normal Flora

Let us take an overview of each anatomical site of the normal microflora with examples. Bacteria majorly contribute to the normal body of the human body, and a deficient number of fungi and protozoa also inhabit the human body. To know the occurrence and distribution of the normal flora, let us look into the different regions of the human body.
distribution of normal flora of human body

Human Skin

Starting with the external surfaces, the skin harbours 1000 to 10,000 microorganisms per square centimetre. A human skin layer possesses the outermost epidermis and inner dermis layer. Many bacterial species exist on the skin’s epidermis layer, which does not penetrate until there is no cut or abrasions over the skin surface.

Skin is the largest organ exposed to the environment, and it daily counters with a large number of microbes. Factors like skin’s dryness, low pH and secretion of inhibitory substances discourage microbial colonization. The dry skin restricts microbial growth, as the condition is not favourable to them.
Human skin
The moist regions like toe webs and groin area possess more normal flora (>10,000). The skin has a normal pH between 3-5 that also restrict microbial growth. The specialized glands within the skin (sweat and oil gland) secrete some inhibitory substances that discourage bacterial growth.

The sweat gland produces lysozymes that cause bacterial cell-wall lysis. Inspite of this fact, some microorganisms (Staphylococcus epidermidis, Aerobic Corynebacteria and Diphtheroids) utilize the water, amino acids, urea, salts and fatty acids secreted by the sweat gland and grow on the skin surface.

Conversely, oil glands primarily produce complex lipids that break down into unsaturated fatty acid by some bacteria (Propionibacterium acnes), which becomes toxic for the growth of other bacteria.

This is what we call bacterial interference, where the growth of one colony inhibits the other. P. acnes serves as a normal skin inhabitant, and any disturbances may result in disfiguring inflammatory lesions or cause acne vulgaris.

Human Eye Conjunctiva

The membrane that constitutes the lining of eyelids and eyeball is termed eye conjunctiva. It is a very delicate membrane, which contains sparse microflora due to the following factors:

  • Due to the high moisture content or continuous flow of tears by the eye’s blinking action, the membrane eliminates the microorganisms.
  • The lachrymal secretions include lysozymes that also lyse the microbial cells.

Moreover, Staphylococcus epidermidis, Staphylococcus aureus and Corynebacterium species, Streptococcus pneumoniae, Neisseria species, Moraxella species etc., inhabit the eye conjunctiva.
human eye


It provides a favourable environment for bacterial growth due to adequate moisture content and dissolved food particles. However, the factors like the continuous flow of saliva and desquamation of the epithelial cells exert mechanical flushing of the microorganisms from the oral cavity to the stomach’s acidic environment, where the digestive enzymes destroy many of the microorganisms.

Some microorganisms resist mechanical flushing and remain in the oral cavity. The normal microflora of mouth includes Staphylococcus, Neisseria, Actinomyces, Lactobacillus species and some yeasts.
human mouth


Aerobes and facultative aerobes reside within the mouth before the first teeth appear. But, the tissue surrounding teeth provides an anaerobic environment, due to which anaerobic bacteria like Bacteroides and Fusobacterium become more evident.

Besides, Streptococcus mutans adhere to the teeth surface by secreting extracellular glucan and primarily cause dental carries. Lactobacillus and Actinomyces species are the secondary invaders of tooth decay. Also, Trichomonas tenax (flagellated protozoan) sometimes appear in the gingival margins and tooth cavities.

Respiratory Tract

Let us take a quick review in the upper and lower respiratory tract of the human body.

Nasopharynx Region or Upper Respiratory Tract

The mucus membrane of the nasopharynx region restricts the growth of microorganisms even though it has a high moisture content. The microorganisms from the air enter the nasopharynx region by passing through the nasal baffle and directly sticks on the mucus or moist layer.

Some bacteria travel down the oropharynx into the stomach’s acidic environment by the rhythmic motion of cilia on the surface of the nasopharynx. The lysozymes destroy a few bacteria in the nasal mucus. Staphylococcus epidermidis, Staphylococcus aureus, Corynebacterium, Neisseria, Haemophilus and Micrococcus species are the normal microflora of the nasopharynx.
human respiratory tract

Lower Respiratory Tract

This region is free of microorganisms. The trachea and bronchi lack normal flora due to the cilia-driven upward movement of mucus. However, the microorganisms that enter the lungs’ alveoli are destructed by the alveolar macrophages via phagocytosis.

Intestinal Tract

To know the intestinal microflora, we need to study all the components of the intestinal tract.


It receives numerous microorganisms from the oral cavity or nasopharynx. The stomach destroys the microbial cells by providing an acidic environment through the secretion of gastric juices (HCl). Lactobacilli and Candida species are evidently seen in the stomach.

Small Intestine

The duodenum portion possesses gram-positive cocci and bacilli. Jejunum portion inhabits Enterococci, Lactobacilli, Diphtheroids and Candida species. Ileum occupies a large number of anaerobic bacteria and the members of Enterobacteriaceae.

Large Intestine

It has a vast number of microbes, and the faecal matter comprises nearly a hundred billion bacteria per gram wet weight. Thus, a large intestine removes a large number of the microbial population through the peristaltic movement of the villi.

Mucus in the large intestine plays a critical role in the removal of microorganisms. The microbial flora, along with the faecal matter, adheres with the mucus layer and consequently rolls up into small masses. At last, the microorganisms in the faeces leave the large intestine by passing through the anus.
human intestinal system

Bacteroides, Fusobacterium, Bifidobacterium, Eubacterium, and Lactobacillus species are the anaerobes that commonly inhabit the large intestine. Escherichia, Proteus, Klebsiella and Enterobacter species are the facultative anaerobes that reside in the colon.

Yeasts (Candida species) and protozoan (Trichomonas hominis) inhabits the cecum region. Commensals like Entamoeba, Endolimax and Iodamoeba species also reside within the colon.

A breastfed and bottle-fed infants have gram-positive bacteria in their intestine until they substitute a liquid food by solid food. Thus, gram-negative bacteria (Bacteroides species) predominate in the intestinal flora of the adult-type diet.

Genitourinary Tract

The excretory system (kidneys, ureters and urinary bladder) is generally sterile, except for the urethra. The urethra of both males and females inhabit Staphylococcus epidermidis, Streptococcus faecalis, Corynebacterium and Neisseria species are significantly present. A female vagina inhabits Lactobacilli, Enterococci, Diphtheroids and Candida albicans.
Genitourinary tract

Beneficial Effects

  • The normal flora is associated with the synthesis of vitamin-B complex and vitamin-K.
  • The colonization of the normal flora on the skin prevents the proliferation of pathogenic microbes, as they compete for the same nutrients.
  • They augment the defence mechanism of the human body or elevate the immune system.
  • Microorganisms produce some antibiotic-like substances. For example, bacteria produce bacteriocins.

Harmful Effects

  • The consequence of opportunistic pathogens causes disease in an immuno-suppressed person.
  • Some microflorae are drug-resistant.
  • A few microflorae may cause confusion in a disease diagnosis.


The normal flora serves as antigens, which can significantly induce an antibody-mediated immune response. Other bacteria compete with the normal flora of the human body to invade the nutrients of the host.

Any disturbances in the normal flora population make the host cell susceptible to pathogens. Therefore, the study of normal microflora gives us a better understanding of the infections to the specific site.

The source of infection can also be determined. We can study the medically important microorganisms excised from the infection site. In simple words, The normal flora of the human body influence the host cell susceptibility and morbidity.

1 thought on “Normal Flora of Human Body”

Leave a Comment

Your email address will not be published. Required fields are marked *